Detailed information of SNP:
|
SNP ID:
sf0613477815(Gbrowse)
Chromosome: chr06 Position: 13477815 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 95.07% | 4.93% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 479 | 88.31% | 11.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 98.79% | 1.21% |
| Tropical Japonica | 86 | 54.65% | 45.35% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613477815 | G->A | LOC_Os06g23114(LOC_Os06g23114.1) | INTRON |