Detailed information of SNP:
|
SNP ID:
sf0613479389(Gbrowse)
Chromosome: chr06 Position: 13479389 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.72% | 37.28% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613479389 | C->T | LOC_Os06g23114(LOC_Os06g23114.1) | INTRON |