Detailed information of SNP:
|
SNP ID:
sf0613493921(Gbrowse)
Chromosome: chr06 Position: 13493921 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.76% | 37.24% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613493921 | G->A | INTERGENIC | None |