Detailed information of SNP:
|
SNP ID:
sf0613535357(Gbrowse)
Chromosome: chr06 Position: 13535357 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 61.66% | 38.34% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 489 | 5.11% | 94.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 330 | 1.52% | 98.48% |
| Tropical Japonica | 92 | 15.22% | 84.78% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613535357 | A->G | INTERGENIC | None |