Detailed information of SNP:
|
SNP ID:
sf0613544501(Gbrowse)
Chromosome: chr06 Position: 13544501 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 77.67% | 22.33% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 473 | 36.15% | 63.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 14.33% | 85.67% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613544501 | T->C | INTERGENIC | None |