Detailed information of SNP:
|
SNP ID:
sf0613549598(Gbrowse)
Chromosome: chr06 Position: 13549598 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.46% | 37.54% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613549598 | C->T | LOC_Os06g23200(LOC_Os06g23200.1) | INTRON |