Detailed information of SNP:
|
SNP ID:
sf0613551012(Gbrowse)
Chromosome: chr06 Position: 13551012 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.07% | 36.93% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613551012 | C->T | INTERGENIC | None |