Detailed information of SNP:
|
SNP ID:
sf0613565825(Gbrowse)
Chromosome: chr06 Position: 13565825 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.66% | 43.34% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613565825 | C->A | INTERGENIC | None |