Detailed information of SNP:
|
SNP ID:
sf0613605149(Gbrowse)
Chromosome: chr06 Position: 13605149 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.50% | 41.50% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613605149 | G->A | INTERGENIC | None |