Detailed information of SNP:
|
SNP ID:
sf0613606174(Gbrowse)
Chromosome: chr06 Position: 13606174 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 60.71% | 39.29% |
| All Indica | 770 | 92.86% | 7.14% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 357 | 93.56% | 6.44% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 203 | 91.63% | 8.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613606174 | G->A | INTERGENIC | None |