Detailed information of SNP:
|
SNP ID:
sf0613606455(Gbrowse)
Chromosome: chr06 Position: 13606455 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 56.48% | 43.52% |
| All Indica | 796 | 92.96% | 7.04% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613606455 | G->A | INTERGENIC | None |