Detailed information of SNP:
|
SNP ID:
sf0613617220(Gbrowse)
Chromosome: chr06 Position: 13617220 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1226 | 95.92% | 4.08% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 306 | 83.99% | 16.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 157 | 70.70% | 29.30% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613617220 | C->T | INTERGENIC | None |