Detailed information of SNP:
|
SNP ID:
sf0613623980(Gbrowse)
Chromosome: chr06 Position: 13623980 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 57.04% | 42.96% |
| All Indica | 791 | 88.75% | 11.25% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613623980 | G->A | INTERGENIC | None |