Detailed information of SNP:
|
SNP ID:
sf0613666273(Gbrowse)
Chromosome: chr06 Position: 13666273 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.53% | 44.47% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613666273 | G->C | INTERGENIC | None |