Detailed information of SNP:
|
SNP ID:
sf0613698048(Gbrowse)
Chromosome: chr06 Position: 13698048 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1230 | 81.54% | 18.46% |
| All Indica | 620 | 73.55% | 26.45% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 61 | 37.70% | 62.30% |
| Indica I | 283 | 70.32% | 29.68% |
| Indica II | 175 | 74.86% | 25.14% |
| Indica Intermediate | 162 | 77.78% | 22.22% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613698048 | G->T | INTERGENIC | None |