Detailed information of SNP:
|
SNP ID:
sf0613724365(Gbrowse)
Chromosome: chr06 Position: 13724365 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1219 | 75.64% | 24.36% |
| All Indica | 611 | 52.86% | 47.14% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 274 | 47.81% | 52.19% |
| Indica II | 167 | 42.51% | 57.49% |
| Indica Intermediate | 170 | 71.18% | 28.82% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613724365 | C->T | LOC_Os06g23530(LOC_Os06g23530.1) | Non-Synonymous SNP |