Detailed information of SNP:
|
SNP ID:
sf0613769355(Gbrowse)
Chromosome: chr06 Position: 13769355 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 69.88% | 30.12% |
| All Indica | 796 | 95.35% | 4.65% |
| All Japonica | 473 | 26.00% | 74.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 322 | 11.18% | 88.82% |
| Tropical Japonica | 90 | 68.89% | 31.11% |
| Japonica Intermediate | 61 | 40.98% | 59.02% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613769355 | A->G | INTERGENIC | None |