Detailed information of SNP:
|
SNP ID:
sf0613800976(Gbrowse)
Chromosome: chr06 Position: 13800976 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 58.53% | 41.47% |
| All Indica | 792 | 89.52% | 10.48% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 46 | 93.48% | 6.52% |
| Indica I | 370 | 87.57% | 12.43% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613800976 | A->C | INTERGENIC | None |