Detailed information of SNP:
|
SNP ID:
sf0613827472(Gbrowse)
Chromosome: chr06 Position: 13827472 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.19% | 38.81% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613827472 | C->T | INTERGENIC | None |