Detailed information of SNP:
|
SNP ID:
sf0613847823(Gbrowse)
Chromosome: chr06 Position: 13847823 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1248 | 55.69% | 44.31% |
| All Indica | 646 | 31.11% | 68.89% |
| All Japonica | 491 | 96.13% | 3.87% |
| Aus | 64 | 3.12% | 96.88% |
| Indica I | 289 | 26.99% | 73.01% |
| Indica II | 181 | 40.33% | 59.67% |
| Indica Intermediate | 176 | 28.41% | 71.59% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613847823 | T->C | LOC_Os06g23700(LOC_Os06g23700.1) | Non-Synonymous SNP |