Detailed information of SNP:
|
SNP ID:
sf0613853533(Gbrowse)
Chromosome: chr06 Position: 13853533 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.79% | 41.21% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 495 | 4.24% | 95.76% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613853533 | C->T | INTERGENIC | None |