Detailed information of SNP:
|
SNP ID:
sf0613863391(Gbrowse)
Chromosome: chr06 Position: 13863391 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 89.01% | 10.99% |
| All Indica | 781 | 88.09% | 11.91% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 362 | 85.64% | 14.36% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 82.52% | 17.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613863391 | A->G | LOC_Os06g23720(LOC_Os06g23720.1) | INTRON |