Detailed information of SNP:
|
SNP ID:
sf0613863555(Gbrowse)
Chromosome: chr06 Position: 13863555 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 92.58% | 7.42% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613863555 | A->G | LOC_Os06g23720(LOC_Os06g23720.1) | INTRON |