Detailed information of SNP:
|
SNP ID:
sf0613865616(Gbrowse)
Chromosome: chr06 Position: 13865616 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.52% | 6.48% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613865616 | A->T | LOC_Os06g23730(LOC_Os06g23730.1) | INTRON |