Detailed information of SNP:
SNP ID:
sf0613867214(Gbrowse)
Chromosome: chr06 Position: 13867214 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 96.40% | 3.60% |
All Indica | 799 | 99.37% | 0.63% |
All Japonica | 496 | 92.54% | 7.46% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 334 | 99.70% | 0.30% |
Tropical Japonica | 94 | 64.89% | 35.11% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0613867214 | A->G | LOC_Os06g23730(LOC_Os06g23730.1) | Non-Synonymous SNP |