Detailed information of SNP:



SNP ID: sf0613867214(Gbrowse)

Chromosome: chr06

Position: 13867214
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1418 96.40% 3.60%
All Indica799 99.37% 0.63%
All Japonica496 92.54% 7.46%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.12% 1.88%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica334 99.70% 0.30%
Tropical Japonica94 64.89% 35.11%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0613867214 A->G LOC_Os06g23730(LOC_Os06g23730.1) Non-Synonymous SNP