Detailed information of SNP:
|
SNP ID:
sf0613878683(Gbrowse)
Chromosome: chr06 Position: 13878683 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613878683 | C->T | INTERGENIC | None |