Detailed information of SNP:
|
SNP ID:
sf0613894432(Gbrowse)
Chromosome: chr06 Position: 13894432 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 56.35% | 43.65% |
| All Indica | 761 | 23.65% | 76.35% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 356 | 24.72% | 75.28% |
| Indica II | 203 | 7.88% | 92.12% |
| Indica Intermediate | 202 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613894432 | T->C | LOC_Os06g23780(LOC_Os06g23780.1) | Non-Synonymous SNP |