Detailed information of SNP:
|
SNP ID:
sf0613932043(Gbrowse)
Chromosome: chr06 Position: 13932043 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.10% | 39.90% |
| All Indica | 794 | 97.23% | 2.77% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613932043 | T->C | INTERGENIC | None |