Detailed information of SNP:
|
SNP ID:
sf0613998069(Gbrowse)
Chromosome: chr06 Position: 13998069 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 91.62% | 8.38% |
| All Indica | 703 | 84.78% | 15.22% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 329 | 83.59% | 16.41% |
| Indica II | 188 | 95.21% | 4.79% |
| Indica Intermediate | 186 | 76.34% | 23.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613998069 | C->T | INTERGENIC | None |