Detailed information of SNP:
|
SNP ID:
sf0614028606(Gbrowse)
Chromosome: chr06 Position: 14028606 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 74.39% | 25.61% |
| All Indica | 733 | 54.57% | 45.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 335 | 50.75% | 49.25% |
| Indica II | 198 | 44.95% | 55.05% |
| Indica Intermediate | 200 | 70.50% | 29.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614028606 | C->T | INTERGENIC | None |