Detailed information of SNP:
|
SNP ID:
sf0614035523(Gbrowse)
Chromosome: chr06 Position: 14035523 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 56.22% | 43.78% |
| All Indica | 780 | 86.54% | 13.46% |
| All Japonica | 495 | 2.63% | 97.37% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 365 | 87.95% | 12.05% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 204 | 81.37% | 18.63% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614035523 | T->C | LOC_Os06g24030(LOC_Os06g24030.1) | Synonymous |