Detailed information of SNP:
|
SNP ID:
sf0614072108(Gbrowse)
Chromosome: chr06 Position: 14072108 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1292 | 97.91% | 2.09% |
| All Indica | 684 | 96.35% | 3.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 315 | 96.19% | 3.81% |
| Indica II | 185 | 96.22% | 3.78% |
| Indica Intermediate | 184 | 96.74% | 3.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614072108 | C->T | INTERGENIC | None |