Detailed information of SNP:
|
SNP ID:
sf0614103938(Gbrowse)
Chromosome: chr06 Position: 14103938 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1230 | 77.15% | 22.85% |
| All Indica | 641 | 58.97% | 41.03% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 58 | 86.21% | 13.79% |
| Indica I | 281 | 58.36% | 41.64% |
| Indica II | 175 | 58.86% | 41.14% |
| Indica Intermediate | 185 | 60.00% | 40.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 60.00% | 40.00% |
| Intermediate | 32 | 81.25% | 18.75% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614103938 | C->G | LOC_Os06g24100(LOC_Os06g24100.1) | Non-Synonymous SNP |