Detailed information of SNP:
|
SNP ID:
sf0614104711(Gbrowse)
Chromosome: chr06 Position: 14104711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 93.69% | 6.31% |
| All Indica | 716 | 90.08% | 9.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 321 | 88.47% | 11.53% |
| Indica II | 201 | 93.53% | 6.47% |
| Indica Intermediate | 194 | 89.18% | 10.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614104711 | C->T | LOC_Os06g24100(LOC_Os06g24100.1) | Non-Synonymous SNP |