Detailed information of SNP:
|
SNP ID:
sf0614106940(Gbrowse)
Chromosome: chr06 Position: 14106940 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 67.32% | 32.68% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 459 | 7.63% | 92.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 306 | 3.59% | 96.41% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 61 | 11.48% | 88.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614106940 | A->T | LOC_Os06g24110(LOC_Os06g24110.1) | Synonymous |