Detailed information of SNP:
|
SNP ID:
sf0614109510(Gbrowse)
Chromosome: chr06 Position: 14109510 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.88% | 39.12% |
| All Indica | 794 | 35.77% | 64.23% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 211 | 43.13% | 56.87% |
| Indica Intermediate | 209 | 43.06% | 56.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614109510 | C->T | LOC_Os06g24110(LOC_Os06g24110.1) | INTRON |