Detailed information of SNP:
|
SNP ID:
sf0614168263(Gbrowse)
Chromosome: chr06 Position: 14168263 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 69.67% | 30.33% |
| All Indica | 748 | 46.39% | 53.61% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 352 | 37.78% | 62.22% |
| Indica II | 198 | 42.93% | 57.07% |
| Indica Intermediate | 198 | 65.15% | 34.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614168263 | C->T | INTERGENIC | None |