Detailed information of SNP:
|
SNP ID:
sf0614223944(Gbrowse)
Chromosome: chr06 Position: 14223944 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 63.87% | 36.13% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 496 | 6.05% | 93.95% |
| Aus | 40 | 97.50% | 2.50% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614223944 | T->A | LOC_Os06g24310(LOC_Os06g24310.1) | UTR_5_PRIME |
| sf0614223944 | T->A | LOC_Os06g24320(LOC_Os06g24320.1) | INTRON |