Detailed information of SNP:
|
SNP ID:
sf0614281748(Gbrowse)
Chromosome: chr06 Position: 14281748 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 76.03% | 23.97% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 492 | 33.94% | 66.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614281748 | T->C | LOC_Os06g24404(LOC_Os06g24404.2) | INTRON |
| sf0614281748 | T->C | LOC_Os06g24404(LOC_Os06g24404.1) | INTRON |