Detailed information of SNP:
|
SNP ID:
sf0614299582(Gbrowse)
Chromosome: chr06 Position: 14299582 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 58.86% | 41.14% |
| All Indica | 751 | 94.54% | 5.46% |
| All Japonica | 491 | 4.07% | 95.93% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 346 | 95.95% | 4.05% |
| Indica II | 202 | 94.55% | 5.45% |
| Indica Intermediate | 203 | 92.12% | 7.88% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 90 | 13.33% | 86.67% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 5 | 60.00% | 40.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614299582 | A->T | INTERGENIC | None |