Detailed information of SNP:
|
SNP ID:
sf0614422784(Gbrowse)
Chromosome: chr06 Position: 14422784 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 97.52% | 2.48% |
| All Indica | 790 | 95.82% | 4.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 206 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614422784 | C->T | LOC_Os06g24594(LOC_Os06g24594.2) | INTRON |
| sf0614422784 | C->T | LOC_Os06g24594(LOC_Os06g24594.3) | UTR_3_PRIME |
| sf0614422784 | C->T | LOC_Os06g24594(LOC_Os06g24594.5) | INTRON |
| sf0614422784 | C->T | LOC_Os06g24594(LOC_Os06g24594.6) | INTRON |