Detailed information of SNP:
|
SNP ID:
sf0614454570(Gbrowse)
Chromosome: chr06 Position: 14454570 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 55.78% | 44.22% |
| All Indica | 739 | 32.21% | 67.79% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 345 | 41.74% | 58.26% |
| Indica II | 198 | 18.69% | 81.31% |
| Indica Intermediate | 196 | 29.08% | 70.92% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614454570 | T->C | INTERGENIC | None |