Detailed information of SNP:
|
SNP ID:
sf0614457505(Gbrowse)
Chromosome: chr06 Position: 14457505 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 97.56% | 2.44% |
| All Indica | 773 | 95.86% | 4.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 202 | 93.07% | 6.93% |
| Indica Intermediate | 199 | 93.97% | 6.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614457505 | G->A | LOC_Os06g24620(LOC_Os06g24620.1) | INTRON |