Detailed information of SNP:
|
SNP ID:
sf0614458943(Gbrowse)
Chromosome: chr06 Position: 14458943 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 87.53% | 12.47% |
| All Indica | 777 | 79.02% | 20.98% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 203 | 66.01% | 33.99% |
| Indica Intermediate | 203 | 67.49% | 32.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614458943 | C->T | INTERGENIC | None |