Detailed information of SNP:
|
SNP ID:
sf0614461371(Gbrowse)
Chromosome: chr06 Position: 14461371 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 93.72% | 6.28% |
| All Indica | 782 | 90.79% | 9.21% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 87.60% | 12.40% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614461371 | T->C | LOC_Os06g24630(LOC_Os06g24630.1) | Synonymous |