Detailed information of SNP:
|
SNP ID:
sf0614461541(Gbrowse)
Chromosome: chr06 Position: 14461541 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 82.85% | 17.15% |
| All Indica | 759 | 77.08% | 22.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 367 | 92.64% | 7.36% |
| Indica II | 193 | 62.69% | 37.31% |
| Indica Intermediate | 199 | 62.31% | 37.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614461541 | G->A | LOC_Os06g24630(LOC_Os06g24630.1) | Synonymous |