Detailed information of SNP:
|
SNP ID:
sf0614461671(Gbrowse)
Chromosome: chr06 Position: 14461671 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 95.53% | 4.47% |
| All Indica | 747 | 92.50% | 7.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 359 | 97.21% | 2.79% |
| Indica II | 195 | 90.26% | 9.74% |
| Indica Intermediate | 193 | 86.01% | 13.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614461671 | C->A | LOC_Os06g24630(LOC_Os06g24630.1) | Non-Synonymous SNP |