Detailed information of SNP:
|
SNP ID:
sf0614480202(Gbrowse)
Chromosome: chr06 Position: 14480202 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 96.96% | 3.04% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614480202 | C->A | INTERGENIC | None |