Detailed information of SNP:
|
SNP ID:
sf0614489154(Gbrowse)
Chromosome: chr06 Position: 14489154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1277 | 53.72% | 46.28% |
| All Indica | 677 | 29.25% | 70.75% |
| All Japonica | 482 | 97.72% | 2.28% |
| Aus | 64 | 3.12% | 96.88% |
| Indica I | 323 | 24.77% | 75.23% |
| Indica II | 183 | 32.24% | 67.76% |
| Indica Intermediate | 171 | 34.50% | 65.50% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614489154 | T->C | LOC_Os06g24670(LOC_Os06g24670.1) | Non-Synonymous SNP |