Detailed information of SNP:
|
SNP ID:
sf0614490665(Gbrowse)
Chromosome: chr06 Position: 14490665 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.06% | 42.94% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614490665 | G->A | LOC_Os06g24680(LOC_Os06g24680.1) | Non-Synonymous SNP |